Ragnar Groot Koerkamp

Pages

• Publications
• Research topics
• Glossary

Posts

• August 1, 2022 Diamond optimisation for diagonal transition
• April 17, 2022 Variations on the WFA recursion
• April 1, 2022 A review of exact global pairwise alignment
• October 20, 2021 Spaced K-mer Seeded Distance
• October 19, 2021 Open Science

Notes

• July 28, 2022 Bidirectional A*
• July 11, 2022 The BiWFA meeting condition
• June 12, 2022 A* variants
• June 12, 2022 IGGSY 22 Slides
• April 28, 2022 Benchmark attention points
• April 28, 2022 Motivation
• April 24, 2022 [WIP] Linear time pairwise alignment of random strings
• December 11, 2021 Pruning for A* heuristics
• November 12, 2021 AStarix
• November 12, 2021 Neighbor joining
• October 28, 2021 UPGMA
• October 22, 2021 RTFE
• October 22, 2021 1st law of Procrastination
• October 22, 2021 Data should be reviewed
• October 14, 2021 Hugo and ox-hugo
• October 13, 2021 Hello, World!